Index

A

add() (pybedlite.overlap_detector.OverlapDetector method)

add_all() (pybedlite.overlap_detector.OverlapDetector method) as_bed_line() (pybedlite.BedRecord method)

B

bed_field_num (pybedlite.BedRecord property) bed_fields (pybedlite.BedRecord property) BedRecord (class in pybedlite) BedSource (class in pybedlite)

BedStrand (class in pybedlite) BedWriter (class in pybedlite) block_count (pybedlite.BedRecord attribute) block_sizes (pybedlite.BedRecord attribute) block_starts (pybedlite.BedRecord attribute)

C

chrom (pybedlite.BedRecord attribute)

close() (pybedlite.BedSource method) (pybedlite.BedWriter method)

E

end (pybedlite.BedRecord attribute) (pybedlite.overlap_detector.Interval attribute) (pybedlite.overlap_detector.Span property)

F

from_bed() (pybedlite.overlap_detector.OverlapDetector class method) from_bedrecord() (pybedlite.overlap_detector.Interval class method)

from_interval() (pybedlite.BedRecord class method) from_ucsc() (pybedlite.overlap_detector.Interval class method)

G

get_enclosed() (pybedlite.overlap_detector.OverlapDetector method)

get_enclosing_intervals() (pybedlite.overlap_detector.OverlapDetector method) get_overlaps() (pybedlite.overlap_detector.OverlapDetector method)

I

Interval (class in pybedlite.overlap_detector)

item_rgb (pybedlite.BedRecord attribute)

L

length() (pybedlite.overlap_detector.Interval method)

M

module pybedlite pybedlite.overlap_detector

N

name (pybedlite.BedRecord attribute) (pybedlite.overlap_detector.Interval attribute) negative (pybedlite.BedRecord property) (pybedlite.overlap_detector.Interval attribute) (pybedlite.overlap_detector.StrandedSpan property)

num_fields (pybedlite.BedSource attribute) (pybedlite.BedWriter attribute)

O

open() (pybedlite.BedSource method) (pybedlite.BedWriter method) opposite (pybedlite.BedStrand property)

overlap() (pybedlite.overlap_detector.Interval method) OverlapDetector (class in pybedlite.overlap_detector) overlaps_any() (pybedlite.overlap_detector.OverlapDetector method)

P

pybedlite module

pybedlite.overlap_detector module

R

reader() (in module pybedlite) refname (pybedlite.BedRecord property) (pybedlite.overlap_detector.Interval attribute) (pybedlite.overlap_detector.Span property)

S

score (pybedlite.BedRecord attribute) Span (class in pybedlite.overlap_detector) SpanType (class in pybedlite.overlap_detector) start (pybedlite.BedRecord attribute) (pybedlite.overlap_detector.Interval attribute) (pybedlite.overlap_detector.Span property)

strand (pybedlite.BedRecord attribute) StrandedSpan (class in pybedlite.overlap_detector)

T

thick_end (pybedlite.BedRecord attribute)

thick_start (pybedlite.BedRecord attribute)

W

write() (pybedlite.BedWriter method)

write_all() (pybedlite.BedWriter method) writer() (in module pybedlite)